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ABC Transporters:  Nature’s Favorite Pump

ATP-binding cassette (ABC) transporters are multi-domain proteins that pump a variety of substrates across biological membranes.  More than a dozen human diseases have been traced to ABC proteins including cystic fibrosis, the most prevalent monogenetic disease in Europe and the Americas.  Over-expression of some ABC transporters in tumor cells confers drug resistance by pumping the drugs out of the cells, a phenomenon that becomes one of the major barriers to effective treatment of cancers. 

The most remarkable features of ABC transporters include:  (1) the substrates transported by different members of the ABC superfamily are largely diverse, arranging from small ions to large polypeptides and polysaccharides.  To understand the basis of the selectivity from one ABC transporter to another is a major challenge. (2) the movement of the substrate, powered by ATP binding and hydrolysis, can be outward (export) or inward (import), which means that the substrate can be taken up by the transporter from either side of the membrane.  It remains elusive whether exporters and importers share a common mechanism of action.  We use X-ray crystallographic and biochemical approaches to address these questions. 

 
 
Structure of the maltose transporter.  The substrate is occluded within a solvent-filled cavity about halfway into the lipid bilayer.

Structural Pathogenesis

In addition to transporters, we also study the structure and function of a group of pathogens, including Salmonella, dengue virus, and SARS-coronavirus.  

Many bacterial pathogens use the type III secretion and translocation system to deliver a variety of effector proteins into the host cell to promote bacteria entry and survival.  In many cases, the bacterial effector proteins are evolved to mimic cellular enzymes even in the absence of sequence similarity. Our lab is interested in understanding the molecular basis of such mimicry.  Most recently, we show that SopA, a Salmonella virulence factor, shares an overall structural similarity to that of eukaryotic HECT E3s. Strikingly, this bacterial protein has obtained, through apparent convergent evolution, several key elements of the HECT domain, including the sequence of the active site loop, the bilobal architecture, and the conformational flexibility of the C-lobe.
 
The two structures of SopA, a Salmonella virulence factor show that this bacterial protein mimics eukaryotic HECT E3s.

Purdue University Seal
Jue Chen's Lab
Department o f Biological Sciences
Structural Biology
Purdue University